Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRTPIRSAAASLSPCLGAAGNAKA---------------KVPPACCSKVAALLKTTPKCLCAILLSPLA----K-QAG-----IKPGIAIGIPKRCNIRNRQAGKKCGN
1SM7 Chain:A ((14-100))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ---------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53127 for 395 contacts (-134.5/contact) +
2D Compatibility (PS) -5949 + (NN) 1534 + (LL) 1096
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -59996.0 ( -151.89 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: