Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACGSSYDLAACLPAAE----SDI-Q---------PSAQCCTQLSSYLATDTPEECLCQTAYSPFFQ----SG-A-------DIQFAIKIPQKCNLSYRAGIQCNGNTIPGGQ
2LVF Chain:A ((16-101))
-----QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM-----DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14872 for 333 contacts (-44.7/contact) +
2D Compatibility (PS) -6500 + (NN) -1110 + (LL) 424
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -25708.0 ( -77.20 by residue)
QMean score : 0.229
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: