Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNAATLQPCLAASKGT---AA-------------------PTTQCCAAVKNVGGAAGGPQCLCSLTTSALARAN--G--------VNPDAAMAIPQKCGLAVPKGFTCNNKPVPGS
1PSY Chain:A ((25-116))
----------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV-----RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23652 for 422 contacts (-56.0/contact) +
2D Compatibility (PS) -6386 + (NN) -3346 + (LL) 260
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -35874.0 ( -85.01 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: