Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPADQMALKLAPCLTAAKDPE------A---SPSKSCCAAVVDIWGHSTECLCAVLLS---NTLKR-----------F-G----V-K-VEVAITIPKRCNIANRPIGYKCGDYTLPSLQD
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG--------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41429 for 403 contacts (-102.8/contact) +
2D Compatibility (PS) -6360 + (NN) 551 + (LL) 924
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -50114.0 ( -124.35 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: