Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YCFLADIQPCIPAIKAT-G----PRQ---APT-------AACCDSISKT--SQVCLCQAVSGPETPR-------AG-LS-VGKALVLPLECGINVPSGTTCAKFFLVVFDLVFA
1W2Q Chain:A ((25-112))
------LKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR--------------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28402 for 349 contacts (-81.4/contact) +
2D Compatibility (PS) -6308 + (NN) 451 + (LL) 2268
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -35841.0 ( -102.70 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: