Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---AVD---CSAAQQAMFPCLSAAVGGNPPPPSVACCAAMKSVSKLEMCQCLVNQTSTVPGLNMTAARNIPANCNISAAADCS-------------------
1IM3 Chain:D ((1-95))
PWFQIEDNRCYIDNGKLF--ARGSIVGNMSRFVFDPKADYGGVG--ENLYVHADDVEFVPGESLKW--NV-RNLDVMPIFETLALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33286 for 408 contacts (-81.6/contact) +
2D Compatibility (PS) -7390 + (NN) -380 + (LL) 260
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -44196.0 ( -108.32 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: