Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSNNYIQLAGCLNAVS----SSAG---------YPGSSCCTAVSHFKNDVNCLCSTLVAAKNA------GVI-----RNMPNALTVPKRCGFKNNIPKNFRCAGYKVGS
2LVF Chain:A ((17-101))
-------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25148 for 339 contacts (-74.2/contact) +
2D Compatibility (PS) -6080 + (NN) 1064 + (LL) 588
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -32776.0 ( -96.68 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: