Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------ACDATNNMGKLL--------PCRQAA-----VKNGKDPKQLAGCCDAVKPFS-------GSKDAA---DCLCQSLLAAQKVDKTVDLHSAI----AIPAKCGIPVQA------------------NLNCNGMAV-PQH------------
1NXJ Chain:A ((28-183))
AISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARST-GWTGLI-VHGAVRDAAAL-RGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
General information:
TITO was launched using:
RESULT:
Template:
1NXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30660 for 485 contacts (-63.2/contact) +
2D Compatibility (PS) -9731 + (NN) -3681 + (LL) -96
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -49818.0 ( -102.72 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1NXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NXJ-query.scw
PDB file :
Tito_Scwrl_1NXJ.pdb
: