Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVPCGTVDMKAAACVGYATGKEPKPSPACCSGLQQLAGTVKTVDDKKNICRCLKNGVKAFA------GV----QDKFLSQIPAVCNIKVGFPVSLNTNCEA
1PNB Chain:B ((12-67))
--------------------------EQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-----------
General information:
TITO was launched using:
RESULT:
Template:
1PNB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12688 for 244 contacts (-52.0/contact) +
2D Compatibility (PS) -4605 + (NN) -269 + (LL) 1952
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -19510.0 ( -79.96 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_1PNB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNB-query.scw
PDB file :
Tito_Scwrl_1PNB.pdb
: