Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIQSAA---ASLSSCLSAAGN------AKA-------KVPPTCCTKVTALINTAPKCLCAVVLSPLAK------KA-G----IKPAIAITIPKRCNIKNRPVGKKCGSYIIP
2LVF Chain:A ((7-101))
-------ECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32136 for 395 contacts (-81.4/contact) +
2D Compatibility (PS) -6608 + (NN) 2915 + (LL) 496
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -39233.0 ( -99.32 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: