Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVAQTLTPCLPHVSNP----GPS--------PPQPCCNRVKTLNSQAKTTQDRHHVCGCLKSLMAGIP-G----LNLPAFASVAKDCGVDIGYIISPNTDCSK
1S6D Chain:A ((19-97))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44112 for 396 contacts (-111.4/contact) +
2D Compatibility (PS) -6378 + (NN) -1981 + (LL) 1172
1D Compatibility (HY) -4400 + (ID) 450
Total energy: -56149.0 ( -141.79 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: