Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---AP--IKVAGGVGNCEKDMQWCIDKTEFFTHGYIYERCCYNMIMKKKCMCLFLKSPKLKIAARNVNNACGRGGLPKDAFSEFKC---------------------
1FNF Chain:? ((1142-1235))
PLSPPTNLHLEANPDTGVLTVSWERSTTPDIT-GYRIT---TTPTNGQ-------QGNSLEEVVHADQSSCTFDNLSPG--LEYNVSVYTVKDDKESVPISDTIIPA
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9281 for 400 contacts (-23.2/contact) +
2D Compatibility (PS) -6932 + (NN) 3250 + (LL) 1400
1D Compatibility (HY) 0 + (ID) 500
Total energy: -12063.0 ( -30.16 by residue)
QMean score : 0.221
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: