Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSNILEITAGLFVLVFTIFLAFFAINKLSDIKKSYKGCYKIYGFFSNANGIEVGDSVKISGVNIGSITGISLDKATYVARLDMCISKDIKLPIDSSALITSSGVVGSKFVNISPGSGIKLI------SNGGKIEYTQSEANVGGIIDKILNMFSK-
2WBX Chain:A ((1-102))
MQVNRLPFFTNHFFDTYLLIS-----------------------------EDTPVGSSVTQ------------------------LLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGD
General information:
TITO was launched using:
RESULT:
Template:
2WBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25049 for 644 contacts (-38.9/contact) +
2D Compatibility (PS) -10356 + (NN) -2468 + (LL) 3524
1D Compatibility (HY) -6400 + (ID) 1000
Total energy: -41749.0 ( -64.83 by residue)
QMean score : 0.214
(partial model without unconserved sides chains):
PDB file :
Tito_2WBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WBX-query.scw
PDB file :
Tito_Scwrl_2WBX.pdb
: