Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAACRGYCRKIYLAI-DNVLYAINETM----VMWKKELKSLVKG---NPTIFND------------KLAISTL---DDCLYMLDMRMIVQSGPIISPVIMIVTK
1CCZ Chain:A ((1-93))
-------FSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSK
General information:
TITO was launched using:
RESULT:
Template:
1CCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46399 for 421 contacts (-110.2/contact) +
2D Compatibility (PS) -7111 + (NN) 6056 + (LL) 308
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -52346.0 ( -124.34 by residue)
QMean score : 0.044
(partial model without unconserved sides chains):
PDB file :
Tito_1CCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CCZ-query.scw
PDB file :
Tito_Scwrl_1CCZ.pdb
: