Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIK-A-QNLSSIHEGDSIACSGVCLTVVDIINDIFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLGSHEIKLSCP-QELIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN
1I8D Chain:A ((1-198))
MFTGIVQGTAKLVSIDEKPN-FRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLA
General information:
TITO was launched using:
RESULT:
Template:
1I8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102859 for 1513 contacts (-68.0/contact) +
2D Compatibility (PS) -20756 + (NN) 1187 + (LL) -28
1D Compatibility (HY) -14800 + (ID) 3000
Total energy: -140256.0 ( -92.70 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_1I8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I8D-query.scw
PDB file :
Tito_Scwrl_1I8D.pdb
: