Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYSAVIVKPKRNVFAVLDIGTTKIICLIVKVSGNFNYKITGTGYKIAEGINGGLITDIKYASYSISSTIGLAEQVSEETIDQIYVNIAGCGILSFNVHNEIIAANHEISDRDIKRVIFQTFEKYIEENVIIHNIPLRYHLDDMTDIREVSGLYGKRLSADVNVVTASRPALTNIENCITNNSGISMAGCIASAYSAGFACLSED-------EKELGTAIVDIGGGCTAIGIFK--RSKLI---YANSIPIGGVHITRDIAYGLCTS-------------------IEHAERIKILYGSTVVTSIDENEYITVQSN--ENDEQARIPKSELVDIIRPRIEEILELVKEQFRK---QKDPINKVVITGGTSRLASMKEIASYIFNKQVRIGCPESYGGLDGEYNKNPVFSAAIGSIKLIVDTFYKNNPDMLGQDGKISKLYHWVKSKVTV |
| 3D2F Chain:A ((152-384)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQRYNIADAAR-IAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTN------APFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST-------------TLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3D2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84076 for 1435 contacts (-58.6/contact) +
2D Compatibility (PS) -20918 + (NN) -5002 + (LL) 12204
1D Compatibility (HY) -3200 + (ID) 2150
Total energy: -103142.0 ( -71.88 by residue)
QMean score : 0.386
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