Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGVDNKYYTLSDC---CGKNGFIVMFICNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKEN---KFTFPYLIDSKQEVAKEYGAV-------CTPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
3A2V Chain:A ((3-176))
------SIPLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR-LGVDLIGLSVDSV-----FSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMEL-----G--RLVDEILRIVKALKLGDS------LKRAVPADWPNNEI
General information:
TITO was launched using:
RESULT:
Template:
3A2V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120584 for 1196 contacts (-100.8/contact) +
2D Compatibility (PS) -17122 + (NN) -3203 + (LL) 1560
1D Compatibility (HY) -5600 + (ID) 1000
Total energy: -145949.0 ( -122.03 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3A2V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A2V-query.scw
PDB file :
Tito_Scwrl_3A2V.pdb
: