Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVMNTYAKSGVDLKLYNKLMKEVKLVVDENKREEVISEVGSFSALFDFAALSKKYDHPVLVSSTDGVGTKLLIAQEV-------DKHDTIGIDLVAMCVNDLLAQGATPLFFL-DYFATGAL--NKDVLLSVVQGITEGC---KQ--AKITLVGGETAEMPGMYGNNHYDLAGFVVGVVDKSKILPNYGVMRAGDYIVGLESSG-----------IHSNGFSLVRHIFEDL--------G--------------ISYNDLSPWDNQLWGEVLLKPTKIYVDSLLPI----MSQVKGIAHITGGGLIDNVPRILPKNLFADVDISSLEWPDIFLWLTKEGKVEKREMLRTFNCGIGMILIIDPENMQGVKNHFQKLGEKIEIIGKLNEKYNPSFNGVVS |
| 3MDO Chain:A ((25-375)) | -------------------------NIDKG------IFPKAFCKIIPDILG--GDPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAVDNILVSSTIGRNKLLVPGEVISAIINGTDELLAELREMGVGCYATGGETADVGDLVR--TIIVDSTVTCRMKRSDVIDN-KNIQGGDVIVGLASSGQATYEKEYNGGMGSNGLTSARHDVFSKYLAKKYPESYDAAVPKELVYSGGLKLTDKIEELGIDAGKMVLSPTRTYAPVIKVLLDKLRSQIHGMVHCSGGAQT-KVMHFVE-NKRVTKD-NLFPIPPLFRTIQEQSGTDWSEMYKVFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQIVGFVEEADKNELIIESE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -208639 for 2515 contacts (-83.0/contact) +
2D Compatibility (PS) -31722 + (NN) -9359 + (LL) 3200
1D Compatibility (HY) -10400 + (ID) 3650
Total energy: -260570.0 ( -103.61 by residue)
QMean score : 0.402
|
|
|