Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNIL-KYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDR--NPGGDTI-IGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
3TIO Chain:B ((2-174))
-------DVLHPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKS----NPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLD
General information:
TITO was launched using:
RESULT:
Template:
3TIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145469 for 1376 contacts (-105.7/contact) +
2D Compatibility (PS) -18140 + (NN) -3314 + (LL) 176
1D Compatibility (HY) -18000 + (ID) 3450
Total energy: -188197.0 ( -136.77 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3TIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIO-query.scw
PDB file :
Tito_Scwrl_3TIO.pdb
: