Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHKGKDEWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
1SQX Chain:E ((38-196))
-----------------------------------LVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVK--KPEWVILIGVCTHLGCVPIANA-GDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG---
General information:
TITO was launched using:
RESULT:
Template:
1SQX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62194 for 1052 contacts (-59.1/contact) +
2D Compatibility (PS) -16650 + (NN) -1636 + (LL) 1472
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -98958.0 ( -94.07 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_1SQX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SQX-query.scw
PDB file :
Tito_Scwrl_1SQX.pdb
: