Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSLLAIEKDSNLVKCHDQLLNEHQGKFRIVEADALYVVEEEL---IERPVKVIANLPYNISLALFLKWLNKIKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPKEFFPRPKVYSSVITVKPLPTQ-RFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETALENAKLSGNERPKNLTVEQFCLLANNM
1QYR Chain:A ((17-264))
-------------QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPF-LGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFS--VEVLTGMGIDPAMRAENISVAQYCQMANYL
General information:
TITO was launched using:
RESULT:
Template:
1QYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153298 for 1983 contacts (-77.3/contact) +
2D Compatibility (PS) -26293 + (NN) -15187 + (LL) 1168
1D Compatibility (HY) -18400 + (ID) 4100
Total energy: -216110.0 ( -108.98 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1QYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QYR-query.scw
PDB file :
Tito_Scwrl_1QYR.pdb
: