Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIIKTIEEKIRGSIDVIDVDIIDESVKHADHYFSSSSMLPSHIKLVLISDNFAGMDSLKRHRLIYELLKSEIE-L-IHAISLHLYTQSEYNLKNK
1NY8 Chain:A ((6-84))
-MENNEIQSVLMNALSLQEVHV---S------------GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRK
General information:
TITO was launched using:
RESULT:
Template:
1NY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57067 for 525 contacts (-108.7/contact) +
2D Compatibility (PS) -7992 + (NN) 140 + (LL) 964
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -69305.0 ( -132.01 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1NY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NY8-query.scw
PDB file :
Tito_Scwrl_1NY8.pdb
: