Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGALTGLWLSFTALSHLIIGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHK--CHDWSWSCCN------RNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
1WQB Chain:A ((1-32))
-----------------------------------------------------------------WLGCARVKEACGPWEWPCCSGLKCDGSECHPQ----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1WQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15750 for 85 contacts (-185.3/contact) +
2D Compatibility (PS) -2757 + (NN) -383 + (LL) 10416
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -10074.0 ( -118.52 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_1WQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WQB-query.scw
PDB file :
Tito_Scwrl_1WQB.pdb
: