Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKH-IYNAVINDL----SWKYLFLFGPKGSGKTHLAHIWQSINNAIFINVNNFI-----------SEIRYSNAFILEDVQDIQ--DEATLLHCYNYMKEN--------NKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGS---MGSNVTIPFVSTLLKRDTT
3PFI Chain:A ((26-252))
------------SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRL-AQTIKIDLPKFTLIGATTRAG---MLSNPLRDRFG--MQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV
General information:
TITO was launched using:
RESULT:
Template:
3PFI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126773 for 1443 contacts (-87.9/contact) +
2D Compatibility (PS) -19361 + (NN) -3091 + (LL) 868
1D Compatibility (HY) -1600 + (ID) 1500
Total energy: -151457.0 ( -104.96 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_3PFI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PFI-query.scw
PDB file :
Tito_Scwrl_3PFI.pdb
: