Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEERYSTKRITVKEIDEILYEEHRVLDHGFIRVVDYMGSDSAIVQAARVSYGKGTKQINQDEVLIKYLMRYHHTTPFEMCEIKFHVKLPIFIARQWIRHRTANVNEYSARYSILDHEFYIPEPEQVAKQSDNNKQGSGEAFDLDISKEIIDSLIND-SNLVYSHYNKFIEQGLTREIARTNLTLNYYTQFYWKVDLHNLLHFLKLRADKRAQHEIRVYAEVILDIVKKWVPLVHSAFVEYCLESACISRTGLGIIRKLIRGENVTREESNIGKREWEELMFILDKQPER
1O28 Chain:D ((17-221))
-------------------------ILDKGFVELVDVMGNDLSAVRAARVSF----KDEERDRHLIEYLMKHGHETPFEHIVFTFHVKAPIFVARQWFRHRIASYNELSGRYSKLSYEFYIPSPERL------------EGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNARSLMNFLNLRADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDILKEV---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1O28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154368 for 1489 contacts (-103.7/contact) +
2D Compatibility (PS) -20918 + (NN) -2425 + (LL) 5044
1D Compatibility (HY) -19200 + (ID) 4850
Total energy: -196717.0 ( -132.11 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1O28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O28-query.scw
PDB file :
Tito_Scwrl_1O28.pdb
: