Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRIIAGKYRGRRIATGKHLAARPTMSIVREAVFNILSSKKIIYNLNILDLFCGSGSFSFEALSRGAKHAFIVDLDYYNLQLPEKTAKDLGITDSITLICCSANALPKPVSKCDIVFIDPPYYSNLVNSTLDGLANSGWLSDDALIILEVRKNEDFQCSKNFSVILERTYGIARIIFLSLST
3B3F Chain:C ((50-123))
-----------------------------------------------VLDVGCGSGILSFFAAQAGARKIYAVEASTM-AQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHG
General information:
TITO was launched using:
RESULT:
Template:
3B3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60640 for 520 contacts (-116.6/contact) +
2D Compatibility (PS) -8418 + (NN) -5197 + (LL) 4208
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -74047.0 ( -142.40 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3B3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B3F-query.scw
PDB file :
Tito_Scwrl_3B3F.pdb
: