Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------MKSLKTVIGMNNKEHIKSVILALLVLMSVVLTYMVWNFSPDIANVDNTDSKKSETKPLTTPMTAKMDTTITPFQIIHSKNDHPEGTIATVSNVNKLTKPLKNKEVKSVEHVRRDHNLMIPDLSSDFTLFDFTYDLPLSTYLGQVLNMN---AKVPNHFNFNRLVIDHDADDNIVLYAISKDRHDYVKLT-TTTKNDHFLDALAAVKKDMQPYTDIITNKDTIDRTTHVFAPSKPEKLKTYR----MVFNTISVEKMNAILFDDSTIVRSSKSGVTTYNNNTGVANYNDKNEKYHYKNLSEDEASSSKMEETIPGTFDFINGHGGFLNEDFRLFSTNNQSGELTYQRFLNGYPTFNKEGSNQIQVTWGE----KGVFDYRRSLLRTDVVLNSEDNKTLPKLESVRSSLANNSDINFEKVTNIAIGYEMQDNSDHNHIEVQINSELVPRWYVEYDGEWYVYNDGRLE------- |
| 4KKI Chain:A ((24-434)) | EICEVSEENYIRLKPLLNTMIQSNYNRGTSAVNVVLSLKLVGIQI------QTLMQKMIQQIKYNVKSRLSDVSSGELALIILALGV---CRNAEENLIYD----YHLIDKLENKFQAEIENMEAHNG----------TPLTNYYQLSLDVLALCLFNGNYSTAEVVNHFT-------------------PENKNYYFGSQFSVDTGAMAVLALTCVKKSLI--NGQIKADEGSLKNISIYTKSLVEKILSEKKENGLIGNTFSTGEAMQALFVSSDYYNE--------NDWNCQQTLNTVLTEISQGAFSNPNAAAQVLPALMGKTFLDINKDS----------SCVSASGNFNIQSYISVNYSVRINETYFTNVTVLNGSVFLSVMEKAQKMNDTIFGFTMEERSWGPYITCIQGLCANNND--------------------RTYWELLSGGEPLSQGA----GSYVVRNGENLEVRWSKYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 22345 for 2962 contacts (7.5/contact) +
2D Compatibility (PS) -37392 + (NN) -2500 + (LL) 5508
1D Compatibility (HY) -15200 + (ID) 3650
Total energy: -30889.0 ( -10.43 by residue)
QMean score : 0.127
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