Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELIGDK-STVQQAIHALQLIGFENVKSYRLPQTN-IV--------------------------TSSIHSSEMT-----GEEHNVLDVRNDDEWRKGHLKQAIHIPHGKLLNEDIP--FDKNDLIYVHCQSGVRSSIAVGILEYKGFTN-IVNVRGGYQHLPAFLK
1YT8 Chain:A ((66-228))
ITVYDDGEGLAPVAAQRLHDLGYSDV-ALLDGGLSGWRNAGGELFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLA--
General information:
TITO was launched using:
RESULT:
Template:
1YT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59546 for 890 contacts (-66.9/contact) +
2D Compatibility (PS) -13642 + (NN) -3725 + (LL) 304
1D Compatibility (HY) -5200 + (ID) 1400
Total energy: -83209.0 ( -93.49 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1YT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT8-query.scw
PDB file :
Tito_Scwrl_1YT8.pdb
: