Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIPPQRQLAIQYNVNRVTIIKSIELLEAEGFIYTKVGSGTYVNDYLNEAHITNKWSEMMLWSSQQRSQYTVQLINKIETDDSYIHISKGELGISLMPHIQLKKAMSNTASHIEDLSFGYNNGYGYIKLRDIIVERMS-KQGIN-VGRENVMITSGALHAIQLLSIGFLGQDAIIISNTPSYIHSTNVFEQLNFRHIDVPYNQINEINTIIDRFIN-----------FKNKAIYIEPRFNNPTGRSLTNEQKKNIITYSERHNIPIIEDDIFRDI-FFSDPTPAIKTYDKLGKVIHISSFSKTIAPAIRIGWIVASEK-IIEQLADVRMQIDYGSSILSQMVVYEMLKNKS-YDKHLVKLRYVLKDKRDFMLNILNNLFKD--IAHWEVPSGGYFVWLVFKIDIDIKYLFYELLSKEKILINPG-YI-YG-SKEKSIRLSFAFESNENIKHALYKIYTYVKKV |
| 1VP4 Chain:A ((42-417)) | --------------------------------------------------------------------------------DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED---DGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLE-RYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233816 for 3095 contacts (-75.5/contact) +
2D Compatibility (PS) -38451 + (NN) -17143 + (LL) 7220
1D Compatibility (HY) -22000 + (ID) 4100
Total energy: -308290.0 ( -99.61 by residue)
QMean score : 0.466
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