Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIVQPVIEQLKAQSHPVCHYIYDLVGLEHHLQHITSSLP-SNCQMYYAMKANSERTILDTISQYVEGFEVASQGEIAKGL-AFKPANHIIFGGPGKTDEELRYAVSEGVQRIHVESMHELQRLNAILEDEDKTQHILLRVNLA-GPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGFHFHSISNNLDSNLHVDVVKLYFKKAKSWSEKHRFPLKHINLGGGIGVNYADLTSQFEWDNFVENFKTLIVEQEMEDVTLNFECGRFIVAHIGYYVTEVLDIKKVHGAWYAILRGGTQQFRLPVSWQHNHPFEIYRYKDNPYSFEKVSISRQDTTLVGQLCTPKDVFAREVQIDAISTGDVIVFKYAGAYGWSISHHDFLSHPHPEFIYLTQTKEDE |
| 2YXX Chain:A ((5-366)) | ---------RKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNP---EGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMER---FRSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASER----YG--FEEINIGGGWGINYSG--EELDLSSYREKVVPDLK---R-FKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGK----------QGKEMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNN-YNSTTRPAEVLVRENG--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YXX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213096 for 3040 contacts (-70.1/contact) +
2D Compatibility (PS) -36946 + (NN) -4506 + (LL) 2976
1D Compatibility (HY) -22400 + (ID) 4000
Total energy: -277972.0 ( -91.44 by residue)
QMean score : 0.471
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