Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEKERQLDLQGKAYPREVKTYYKNNQVGTYLGVQVA-DGQTVKKGDMLINYKINSNKRQQLVDKINDTQHIITEVYLNITKGLNNREIQKKLIEYKQTLYEAQQQLYQYDSQNRDSMYASFDGKIMIKNIDND---SDNQPILYLISKE-SHIKTSVTEFDLNKVKKGDKVNLSITS-TGKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSISASPIFKSNNNSELSKYGVIIDDLSLPI-RAGYSLEIKVPLNAIKIPKSVLTK---GNNVFIVNKNSIVEK-RNIRIKRI-NGDIIVEKGLKPGDKLIKQPK-STMNDGDKVEISS----------- |
4KKU Chain:A ((23-296)) | ----------------------------------------------------------------------YRFPVIAMKVKKGILSDYLSLNGDVDTKVKADIFPDA--VGKITSLRIKLGAYVQKGQIVATLDP-------------------KSPVRAPISGYILNITKKIGETVNPQSNIAVVGRIDTKQILTYVSEKYISNIKVGNDAIIEVGAYSNEKFKAKVSEISPILDS-------------------------KSRTIEVYLTPIGSNLDKLI-----------IGMFSKIKLITKRFKDVIKISREAVVEREGKKFVFKVDLESKSVQMLPITVLFEIDNIVALSGEVEENDLIV-VEGMSALSNGSLINLVDTKEGLSAESNI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8622 for 1672 contacts (5.2/contact) +
2D Compatibility (PS) -25109 + (NN) -2088 + (LL) 9500
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -17425.0 ( -10.42 by residue)
QMean score : 0.369
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