Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKL-ADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKDKEASQDKQSKDQTKSSDKDNHKKPTSTDKDQKANDKHQS
4AJ5 Chain:K ((1-113))
----------------------MEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQ--
General information:
TITO was launched using:
RESULT:
Template:
4AJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 43734 for 433 contacts (101.0/contact) +
2D Compatibility (PS) -11716 + (NN) -3575 + (LL) 2344
1D Compatibility (HY) -2000 + (ID) 850
Total energy: 27937.0 ( 64.52 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_4AJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AJ5-query.scw
PDB file :
Tito_Scwrl_4AJ5.pdb
: