Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSQELLAIAVDAIDNK-KGEDTISLEMKGISDMT--DYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
2OMD Chain:A ((66-135))
-----EMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKR-VPIWKKEIFK--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1466 for 376 contacts (-3.9/contact) +
2D Compatibility (PS) -7490 + (NN) -5068 + (LL) 4112
1D Compatibility (HY) 0 + (ID) 300
Total energy: -10212.0 ( -27.16 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_2OMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OMD-query.scw
PDB file :
Tito_Scwrl_2OMD.pdb
: