Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------MNKHKKGSIFGIIG----------LVVIFAVVSFLFFSMISDQIFFKHVKSD-------------IKIEKLNVTLNDAAKK---------------QINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQ----GIDKNRIKRMLVDRP--TLLKH--------TDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKD------PIKTGAEY---------AKKHGWDTPEKA---------ISGGADFIHK--HFLSSTDQNTLYSMRWNPKNPGEHQYATDIK-WAESNATIIADFYKNMK---TEGKYFKYFVYKDDSKHLNK----- |
| 4LUQ Chain:A ((20-428)) | HMTATSDLIESLISYSWDDWQVTRQEARRVIAAIRNDNVPDATIAALDKSGSLIKLFQRVGPPELARSLIASIAGRTTMQRYQARNALIRSLINNPLGTQTDNWIYFPTITFFDICADLADAAGRLGFAAAGATGVASQAIQGPFSGVGATGVNPTDLPSIAFGDQLKLLN-KDPATVTKYSNPLGDLGAYLSQLSPQDKLNQAQTLVGQPISTLFPDAYPGNPPSRAKVMSAAARK-----YDLTPQLIGAIILAEQRDQTRDEDAKDYQAAVSIKSANTSIGLGQVVVSTAIKYELFTDLLGQPVRRGLSRKAVATLLASDEFNIFATARYIRYVANLASQQDLRKLPKTRGAFPSIDLRAYAGNPRNWPRDNVRALASEYTSRPWDDNLSPGWPMFVDDAYATFLDPGMRFP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LUQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 19666 for 2006 contacts (9.8/contact) +
2D Compatibility (PS) -29159 + (NN) -10487 + (LL) 424
1D Compatibility (HY) -5200 + (ID) 2450
Total energy: -27206.0 ( -13.56 by residue)
QMean score : 0.114
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