Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRSLLFLTVLLLLFSFSSITNEVSASSSFDKGKYKKGDDASYFEPTGPYLMVNVTGVDSKGNELLSPHYVEFPIKPG---TTLTKEKIEYYVEWALDATA---YKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVVPDLSEHIKNPGFNLITKVVIEKK
1L4Z Chain:B ((15-134))
-----------------------------------------------NNSQLVVSVAGTVEGTNQDISLKFFEIDLTSRAMPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATITDRNGKV--------YFADKDGSVTLPT----QPVQEFLLSGHVRVRP-
General information:
TITO was launched using:
RESULT:
Template:
1L4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55003 for 682 contacts (-80.6/contact) +
2D Compatibility (PS) -11434 + (NN) 1074 + (LL) 3820
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -66543.0 ( -97.57 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1L4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4Z-query.scw
PDB file :
Tito_Scwrl_1L4Z.pdb
: