Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIIIGSDEAGKRLKEVIKSYLLDNKYDVVDVTEG---QEVDFVDATLAVAKDVQSQEGNLGIVIDAFGAGSFMVATKIKGMIAAEVSDERSGYMTRGHNNSRMITMGSEIVGDTLAKNVVKGFVEGKYD-GGRHQIRVDMLNKMC
2VVP Chain:A ((4-149))
MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKAQRHQRRIDILAEYE
General information:
TITO was launched using:
RESULT:
Template:
2VVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87483 for 1232 contacts (-71.0/contact) +
2D Compatibility (PS) -15235 + (NN) -7971 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 2000
Total energy: -117089.0 ( -95.04 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2VVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVP-query.scw
PDB file :
Tito_Scwrl_2VVP.pdb
: