Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVD-PSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESY---ADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
3IXQ Chain:D ((6-226))
------LKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLVTLDEYD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEMGGEAVIRLGDRKRGPV--ITDNGNMIIDVFMNID-DAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGVKTLKK
General information:
TITO was launched using:
RESULT:
Template:
3IXQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141172 for 1899 contacts (-74.3/contact) +
2D Compatibility (PS) -24202 + (NN) -10495 + (LL) 1264
1D Compatibility (HY) -21600 + (ID) 4200
Total energy: -200405.0 ( -105.53 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3IXQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IXQ-query.scw
PDB file :
Tito_Scwrl_3IXQ.pdb
: