Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKHLQDHIQFLEQFINNVNALTAKMLKDLQNEYEISLEQSNVLGMLNKEPLTISEITQRQGVNKAAVSRRIKKLIDAKLVKLDKPNLNIDQRLKFITLTDKGRAYLKERNAIMTDIAQDITNDLNSEDIENVRQVLEVINHRIKTYSNHK
3KP4 Chain:B ((5-149))
----IEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEK----------IIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTS--
General information:
TITO was launched using:
RESULT:
Template:
3KP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42891 for 814 contacts (-52.7/contact) +
2D Compatibility (PS) -14674 + (NN) -5800 + (LL) 1080
1D Compatibility (HY) -18000 + (ID) 4250
Total energy: -84535.0 ( -103.85 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_3KP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KP4-query.scw
PDB file :
Tito_Scwrl_3KP4.pdb
: