Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVLTDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQL--AQDSVKVVPTDVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNP-----------SDRKKLDPQDIAEAVLYALTQPKHVNVNEITVRPV
2JAP Chain:B ((3-243))
-SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHEIFIRP-
General information:
TITO was launched using:
RESULT:
Template:
2JAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123475 for 1997 contacts (-61.8/contact) +
2D Compatibility (PS) -24884 + (NN) -9214 + (LL) 504
1D Compatibility (HY) -16800 + (ID) 4650
Total energy: -178519.0 ( -89.39 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_2JAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAP-query.scw
PDB file :
Tito_Scwrl_2JAP.pdb
: