Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIIT--DEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQ--PFARCFEMKEACYAATPAIQLAKDYLATRP--NEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILALNE-DAVAYTEDVYDFWRPTG-HKYPLVDGALSKDAYIRSFQQSWNEY------AKRQGKSLADFASLCFHVPFTKMGKK-ALESIID--------------------------------NAD----ETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLLENRD-LQAGETIGLFSYGSGSVGEFYSATLVEGYKD-----HLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEE-QDAV------HEDRHIFYLSNIE-NNVREYHRPE |
| 2F82 Chain:A ((3-451)) | KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEG-PARPTGGAAAIAMLIGPDAP-IVFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFHSPYNKLVQKSFARLLYNDFLRNASSIDEAAKEKFTPYSSLSLDESYQSRDLEKVSQQLAKTYYDAKVQPTTLVPKQVGNMYTASLYAAFASLVHNKHSDLAGKRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGA-KEFVTSKEGILDLLAPGTYYLKEVDSLYRRFYGKK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F82.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172822 for 3402 contacts (-50.8/contact) +
2D Compatibility (PS) -41455 + (NN) -12413 + (LL) 384
1D Compatibility (HY) -22000 + (ID) 4850
Total energy: -253156.0 ( -74.41 by residue)
QMean score : 0.441
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