Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKK-KNALLWDLQNGLSALYAR-DYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALNGDKN------KGLGYLNEAYGI-SQSPFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPCKRSLESPKIIDARELLSGFVTAPQVFCSNRHNILYVRSFKNGFVLSHLK |
2H6F Chain:A ((103-274)) | ---------------------------FRAVLQRDERSERAFKLTRDA-IELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------------------------------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH---RQWVIQEFK---------LWDNELQYVDQ--------LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2H6F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 27164 for 1115 contacts (24.4/contact) +
2D Compatibility (PS) -17301 + (NN) -8291 + (LL) 15092
1D Compatibility (HY) -2400 + (ID) 600
Total energy: 13664.0 ( 12.25 by residue)
QMean score : 0.347
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