Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIEC-ESVLKSGDLIDVVLDMAK--DYDLLLIGASESNLLYRLFISHQNSLVEQSSIPVVIAK
3TNJ Chain:A ((7-146))
HHILLAVDFSSEDSQVVQKVRNLASQI-GARLSLIHVLD-------YGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSH--------LGSTANSVLHYAKCDVLAVR
General information:
TITO was launched using:
RESULT:
Template:
3TNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97172 for 836 contacts (-116.2/contact) +
2D Compatibility (PS) -13407 + (NN) -9659 + (LL) 1580
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -123408.0 ( -147.62 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_3TNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TNJ-query.scw
PDB file :
Tito_Scwrl_3TNJ.pdb
: