Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLNMNTHTRGIDSGLIHSLQSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPRDYLGYRSLGEEIAIFNPKDYDSW----QERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV |
1GP6 Chain:A ((46-88)) | ----------------------------------------------------------------------------------------------------------------------------------QVPTIDLKNIESDDEKIRENCIEELKKASLD--WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GP6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2900 for 200 contacts (-14.5/contact) +
2D Compatibility (PS) -4618 + (NN) -5482 + (LL) 8588
1D Compatibility (HY) 0 + (ID) 300
Total energy: -4712.0 ( -23.56 by residue)
QMean score : 0.394
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