Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVD-NLSLENQQKLKETLVPFSAFASVDFLDISTP-NLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLASLFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFGAAKDFSSPKSLKHFQTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCVFCPEQDLLTLACYQ-----KVLQLPYIYNAHPFMANQKR--FIPNQQEIIMLHFYFVGKPWILPTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
| 3U2U Chain:A ((2-225)) | MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTT------------------RRLVVLATPQVSDSMRKVLETVFD------EVIMVDVLDSGDS-------------AHLT----LMKRPELG-VTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG-----------------------------------WPDCFNSGVFVYQPSVET----YNQLLHLASEQ-GSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFTTNVLPLLQ------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U2U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194112 for 1776 contacts (-109.3/contact) +
2D Compatibility (PS) -22460 + (NN) -5376 + (LL) 8960
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -224038.0 ( -126.15 by residue)
QMean score : 0.349
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