Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNNIKQDLGSLDFIVHSVAFAPKEALEGSLLET-SKSAFNTAMEISVYSLIELTNTLKPLLN-NGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHNIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSNGVSGEVHFVDAGYHVMGMGAVEEKDNKATLLWDLHKEQ
4M87 Chain:B ((2-254))
-GFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPI-----------GKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALS-------------------
General information:
TITO was launched using:
RESULT:
Template:
4M87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187914 for 2053 contacts (-91.5/contact) +
2D Compatibility (PS) -26360 + (NN) -8705 + (LL) 2248
1D Compatibility (HY) -24800 + (ID) 5800
Total energy: -251331.0 ( -122.42 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_4M87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M87-query.scw
PDB file :
Tito_Scwrl_4M87.pdb
: