Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLQRIYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTETHPAIAEALDKLYKGINARDIDDVIITSCATESNNWV------------LKGVYFDECLKKGKNHIITTVAEHPAVRSTCNFL-ESLGVEVTYLPINE-HGSITADQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKE----------KGVLFHTDAVQAIGKIPVDVLKANVDFLSFSAHKFHGPKGIGGLYIRSGVG-LTP----LFHGGEHMNGRRSGTLNVPYIVGMGEAMKLAVEHLDYEKEVVGKLRDKLEEALLKIPDVMVVGDRVH---------RVPNTTLISVRGIEGEAMLWDLNRSNIAASTGSACASE-DLEANPVMVAIGASKELAHTAIRLSLSRFNTEAEIDKTIEVFSQAAVRLRNISSSY |
3A9Y Chain:B ((18-428)) | --RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP-QDIIFTSGGTESNNLVIHSTVRCFHEQQ------------TRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR-GVGKLTPLYPMLFGGGQERN-FRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERL-----EAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEGPV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A9Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166462 for 3195 contacts (-52.1/contact) +
2D Compatibility (PS) -38560 + (NN) -12133 + (LL) 1540
1D Compatibility (HY) -22400 + (ID) 7200
Total energy: -245215.0 ( -76.75 by residue)
QMean score : 0.531
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