Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEK--PGKIVGGSIQFLGQDLLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEV-LKIHHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEILIADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQASAKELFADPRHPYTKALLNAIPKPGKEYRKKRLETVDENVDYLSFQKELR
3C4J Chain:B ((24-262))
-MIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKS-TFLRCLNLLEDFDEGEIIIDGIN------LKAKDTNLNK-VR-EEVGMVFQR--FNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKVGLK---DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3C4J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141974 for 1934 contacts (-73.4/contact) +
2D Compatibility (PS) -25975 + (NN) -13906 + (LL) 2920
1D Compatibility (HY) -22000 + (ID) 4350
Total energy: -205285.0 ( -106.15 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_3C4J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C4J-query.scw
PDB file :
Tito_Scwrl_3C4J.pdb
: