Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQG-YLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLEILP-EVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQ-----KYALKNNACTFPKVEFHASGDVIWLERQAKEWLKL
2VVT Chain:B ((27-277))
--IGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVT--KNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVT------LIDSGAETVGEVSMLLDYFDIAHTPEAPTQPH-EFYTTGSAKMFEEIASSWLGI
General information:
TITO was launched using:
RESULT:
Template:
2VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -236631 for 2151 contacts (-110.0/contact) +
2D Compatibility (PS) -25634 + (NN) -6386 + (LL) 476
1D Compatibility (HY) -19600 + (ID) 4600
Total energy: -292375.0 ( -135.93 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVT-query.scw
PDB file :
Tito_Scwrl_2VVT.pdb
: