Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLIAQG------------------KESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFN-PLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKTTTRSAK
3OXO Chain:B ((2-246))
--KFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCK-AAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRKVR
General information:
TITO was launched using:
RESULT:
Template:
3OXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119542 for 1915 contacts (-62.4/contact) +
2D Compatibility (PS) -23841 + (NN) -5690 + (LL) 336
1D Compatibility (HY) -23200 + (ID) 6850
Total energy: -178787.0 ( -93.36 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3OXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OXO-query.scw
PDB file :
Tito_Scwrl_3OXO.pdb
: