Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MAFMRKSYRAVSV--DSVTIKSIKAKLGKNHYHK----VSGSHQVGGAHKVISSFNTKNPFFIRQHLKSH---------
1YCR Chain:A ((9-93))
ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNLVV
General information:
TITO was launched using:
RESULT:
Template:
1YCR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7141 for 362 contacts (19.7/contact) +
2D Compatibility (PS) -6682 + (NN) -1258 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -5449.0 ( -15.05 by residue)
QMean score : 0.119
(partial model without unconserved sides chains):
PDB file :
Tito_1YCR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCR-query.scw
PDB file :
Tito_Scwrl_1YCR.pdb
: